Blog Review

May 26, 2017

I started this blog 13 years ago in March 2004 – the first two articles are about six sigma, here and here. The blog entry being posted now is my 344th blog entry.

Although the blog has an eclectic range of topics, one unifying theme for many entries is specifications, how to set them and how to evaluate them.

A few years ago, I was working on a hematology analyzer, which has a multitude of reported parameters. The company was evaluating parameters with the usual means of precision studies and accuracy using regression. I asked them:

  1. a) what are the limits that, when differences from reference are contained within these limits, will ensure that no wrong medical decisions would be made based on the reported result (resulting in patient harm) and
  2. b) what are the (wider) limits that, when differences from reference are contained within these limits, will ensure that no wrong medical decisions would be made based on the reported result (resulting in severe patient harm)

This was a way of asking for an error grid for each parameter. I believe, then and now, that constructing an error grid is the best way to set specifications for any assay.

As an example about the importance of specifications there was a case for which I was an expert witness whereby the lab had produced an incorrect result that led to patent harm. The lab’s defense was that they had followed all procedures. Thus, as long as they as followed procedures, they were not to blame. But procedures, which contain specifications, are not always adequate. As an example, remember the CMS program “equivalent quality control”?


Antwerp talk about total error

March 12, 2017

Looking at my blog stats, I see that a lot of people are reading the total analytical error vs. total error post. So, below are the slides from a talk that I gave at a conference in Antwerp in 2016 called The “total” in total error. The slides have been updated. Because it is a talk, the slides are not as effective as the talk.

 

 

TotalError


Help with sigma metric analysis

January 27, 2017

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I’ve been interested in glucose meter specifications and evaluations. There are three glucose meter specifications sources:

FDA glucose meter guidance
ISO 15197:2013
glucose meter error grids

There are various ways to evaluate glucose meter performance. What I wished to look at was the combination of sigma metric analysis and the error grid. I found this article about the sigma metric analysis and glucose meters.

After looking at this, I understand how to construct these so-called method decision charts (MEDX). But here’s my problem. In these charts, the total allowable error TEa is a constant – this is not the case for TEa for error grids. The TEa changes with the glucose concentration. Moreover, it is not even the same at a specific glucose concentration because the “A” zone limits of an error grid (I’m using the Parkes error grid) are not symmetrical.

I have simulated data with a fixed bias and constant CV throughout the glucose meter range. But with a changing TEa, the estimated sigma also changes with glucose concentration.

So I’m not sure how to proceed.


Letter to be published

November 15, 2016

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Recently, I alerted readers to the fact that the updated FDA POCT glucose meter standard no longer specifies 100% of the results.

So I submitted a letter to the editor to the Journal of Diabetes Science and Technology.

This letter has been accepted – It seemed to take a long time for the editors to decide about my letter. I can think of several possible reasons:

  1. I was just impatient – the time to reach a decision was average
  2. The editors were exceptionally busy due to their annual conference which just took place.
  3. By waiting until the conference, the editors could ask the FDA if they wanted to respond to my letter.

I’m hoping that #3 is the reason so I can understand why the FDA changed things.


Glucose Error Grids – Well Known?

September 24, 2016

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The picture shows a possible stranded sea creature at low tide, taken from 3,500 feet.

I was talking to a colleague about a project I’m working on and in order to explain, I asked him if he was familiar with glucose error grids. He said no, which surprised me. My colleague has been developing immunoassay reagents for a long time and while development and not evaluation is his specialty, as part of development, one must prove precision and accuracy.

I took this to mean that the concept of error grids is not that well known outside of diabetes. This is unfortunate, since error grids make more sense to me than total error, measurement uncertainty, or separate requirements for precision and accuracy.


MU vs TE vs EG

July 29, 2016

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Picture is aerial view from a Cirrus of Foxwoods casino in CT

MU=measurement uncertainty TE=total error EG=error grid

Having looked at a blog entry by the Westgards, which is always interesting, here are my thoughts.

To recall, MU is a “bottoms-up” way to model error in a clinical chemistry assay (TE uses a “top down” model) and EG has no model at all.

MU is a bad idea for clinical chemistry – Here are the problems with MU:

  1. Unless things have changed, MU doesn’t allow for bias in it modeling process. If a bias is found, it must be eliminated. Yet in the real world, there are many uncorrected biases in assays (calibration bias, interferences).
  2. The modeling required by MU is not practical for a typical clinical chemistry lab. One can view the modeling as having two major components: the biological equations that govern the assay (e.g., Michaelis Menten kinetics) and the instrumentation (e.g., the properties of the syringe that picks up the sample). Whereas clinical chemists may know the biological equations, they won’t have access to the manufacturer’s instrumentation data.
  3. The math required to perform the analysis is extremely complicated.
  4. Some of the errors that occur cannot be modeled (e.g., user errors, manufacturing mistakes, software errors).
  5. The MU result is typically reported as the location of 95% of the results. But one needs to account for 100% of the results.
  6. So some people get the SD for a bunch of controls and call this MU – a joke.

TE has been much more useful than MU, but still has problems:

  1. The Westgard model for TE doesn’t account for some important errors, such as patient interferences.
  2. Other errors that occur (e.g., user errors, manufacturing mistakes, software errors) may be captured by TE but the potential for these errors are often excluded from experiments (e.g., users in these experiments are often more highly trained than typical users).
  3. Although both MU and TE rely on experimental data, TE relies solely on an experiment (method comparison or quality control). There are likely to be biases in the experiment which will cause TE to be underestimated. (See #2).
  4. The TE result is typically reported as the location of 95% of the results. But one needs to account for 100% of the results.
  5. TE is often overstated e.g., the sigma value is said to provide a specific (numeric) quality for patient results. But this is untrue since TE underestimates the true total error.
  6. TE fails to account for the importance of bias. That is, one can have results that are within TE goals but can still cause harm due to bias. Klee has shown this as well as me. For example, bias for a glucose meter can cause diabetic complications but still be within TE goals.

I favor error grids.

EG

  1. Error grids still have the problem that they rely on experimental data and hence there may be bias in the studies.
  2. But 100% of the results are accounted for.
  3. There is the notion of increasing patient harm in EG. With either MU or TE, there is only the concept of harm vs no harm. This is not the real world. A glucose meter result of 95 mg/dL (truth=160 mg/dL) has much less harm than a glucose meter result of 350 mg/dl (truth=45 mg/dL).
  4. EG simply plots test vs. reference. There are no models (but there is no way to tell the origin of the error source).

Responding to Prof. Jim W.

April 13, 2016

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I need to speak up due to a summary made by Jim Westgard regarding my talk in the Quality in the Spotlight Conference from Antwerp.

  1. Jim referred to my presentation where I said the “total” in total analytical error left out too many errors. Jim suggested I referred to pre-pre-analytical errors among others but I definitely stated that analytical errors are also left out of the Westgard total error model. I’m not sure what a pre- pre- analytical error is anyway. It is true that there are some rare errors that will be very difficult for a lab to detect, such as software errors or manufacturing mistakes.
  2. Jim suggested that total analytical error (e.g., the Westgard model) is broader than separate estimates of precision and bias. I don’t see how.
  3. He said that labs don’t want more complex equations / models. I’m sure this is true but what our company did was even simpler than the Westgard model – we simply looked at the difference from candidate minus the comparison method for all data. There were no models. The data were ranked to show the error limits achieved by 95% and 100% of the data. Not being constrained by models makes things simple.
  4. Jim said that ISO 15189 does not require uncertainty measurement that includes pre- and post- analytical error. That may be, but it doesn’t make it right.