A comment about terms used in EP5-A3 and bias



I have the new version of EP5-A3, which is CLSI’s document about precision. Having been kicked out of CLSI, I was loathe to buy it but if one is consulting in evaluating assays, it’s required.

As I read through the document, one note on terminology – this was in the A2 version as well – the use of the term “total precision” has been dropped and replaced with either “within laboratory precision” or “within device precision.”

All three terms have issues – the replacement does not solve these issues. The problem is that whichever term one is using does not account for all sources of error, which is implied in the terms. In an experiment such as EP5, the goal is to randomly sample sources of imprecision from the population of interest. Take reagents for example. The study may use one reagent or in many cases in industry – three or more reagents. But these reagents are not a random sample from the population of reagents – that’s of course impossible, because for a new assay, there are often only a few reagents that have been made and future reagents don’t exist. Are future reagents the same? That’s hard to say as raw materials change, vendor and manufacturing procedures change, QC procedures for approving lots change, personnel change, and so on.

The same could be said for the 20 days. Say the assay’s projected life is 10 years. One cannot randomly select 20 days from all future 20 day sequences in the 10 years – one is stuck with the 20 days that are current.

Formally, these are forms of bias and thus the EP5 protocol is biased. This is not some bad, deliberate bias – it is unavoidable bias, but bias nevertheless.

So in reality, the EP5 experiment is estimating precision based on the error sources that are allowed to be in the experiment. Whatever term is used: “total precision”, “within laboratory precision” or within device precision”, it is likely that precision has been underestimated.


Leave a Reply

Fill in your details below or click an icon to log in:

WordPress.com Logo

You are commenting using your WordPress.com account. Log Out /  Change )

Google+ photo

You are commenting using your Google+ account. Log Out /  Change )

Twitter picture

You are commenting using your Twitter account. Log Out /  Change )

Facebook photo

You are commenting using your Facebook account. Log Out /  Change )


Connecting to %s

%d bloggers like this: